Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ESCA | rs2818874 | chr1:247170629 | T/C | 1.35E-5 | 135 | 3.87 | 8.58 | 7.03 | KM Plot |
| ESCA | rs2818893 | chr1:247160495 | A/C | 1.12E-5 | 137 | 3.87 | 8.27 | 7.17 | KM Plot |
| ESCA | rs28540229 | chr1:247179076 | A/G | 9.08E-6 | 140 | 6.77 | 11.52 | 3.87 | KM Plot |
| ESCA | rs28614003 | chr1:247179352 | G/A | 9.08E-6 | 140 | 6.77 | 11.52 | 3.87 | KM Plot |
| ESCA | rs28705360 | chr21:46253471 | C/G | 2.34E-5 | 142 | 7.03 | 7.9 | 2.63 | KM Plot |
| ESCA | rs3808351 | chr7:1126659 | G/A | 6.91E-5 | 137 | 5.05 | 8.72 | 3.93 | KM Plot |
| ESCA | rs41279212 | chr15:34032131 | G/A | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs41310567 | chr1:247200491 | A/G | 4.55E-5 | 140 | 6.43 | 14.13 | 3.87 | KM Plot |
| ESCA | rs4694372 | chr4:71963789 | A/G | 4.28E-5 | 142 | 20.33 | 6.22 | 7.13 | KM Plot |
| ESCA | rs55779931 | chr15:34033214 | G/T | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs55828732 | chr15:34032797 | C/T | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs56003089 | chr15:34033031 | C/A | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs56107222 | chr21:46252789 | T/C | 2.34E-5 | 142 | 7.03 | 7.9 | 2.63 | KM Plot |
| ESCA | rs56122459 | chr15:34032840 | C/T | 1.5E-5 | 136 | 7.37 | 5.13 | 2.7 | KM Plot |
| ESCA | rs56282332 | chr21:46253088 | G/A | 2.28E-5 | 142 | 7.08 | 7.53 | 2.63 | KM Plot |